From 05203204d74ec087db27a5a8b1f4a875cfde3ffb Mon Sep 17 00:00:00 2001 From: Xevion Date: Sun, 14 Jul 2019 03:00:18 -0500 Subject: [PATCH] rna transcription exercise --- .../rna-transcription/.exercism/metadata.json | 1 + python/rna-transcription/README.md | 68 +++++++++++++++++++ python/rna-transcription/rna_transcription.py | 3 + .../rna_transcription_test.py | 30 ++++++++ 4 files changed, 102 insertions(+) create mode 100644 python/rna-transcription/.exercism/metadata.json create mode 100644 python/rna-transcription/README.md create mode 100644 python/rna-transcription/rna_transcription.py create mode 100644 python/rna-transcription/rna_transcription_test.py diff --git a/python/rna-transcription/.exercism/metadata.json b/python/rna-transcription/.exercism/metadata.json new file mode 100644 index 0000000..13f3ab3 --- /dev/null +++ b/python/rna-transcription/.exercism/metadata.json @@ -0,0 +1 @@ +{"track":"python","exercise":"rna-transcription","id":"3fc8fca40565475dbeb36f5e8048281f","url":"https://exercism.io/my/solutions/3fc8fca40565475dbeb36f5e8048281f","handle":"Xevion","is_requester":true,"auto_approve":false} \ No newline at end of file diff --git a/python/rna-transcription/README.md b/python/rna-transcription/README.md new file mode 100644 index 0000000..4a2f62b --- /dev/null +++ b/python/rna-transcription/README.md @@ -0,0 +1,68 @@ +# RNA Transcription + +Given a DNA strand, return its RNA complement (per RNA transcription). + +Both DNA and RNA strands are a sequence of nucleotides. + +The four nucleotides found in DNA are adenine (**A**), cytosine (**C**), +guanine (**G**) and thymine (**T**). + +The four nucleotides found in RNA are adenine (**A**), cytosine (**C**), +guanine (**G**) and uracil (**U**). + +Given a DNA strand, its transcribed RNA strand is formed by replacing +each nucleotide with its complement: + +* `G` -> `C` +* `C` -> `G` +* `T` -> `A` +* `A` -> `U` + +## Exception messages + +Sometimes it is necessary to raise an exception. When you do this, you should include a meaningful error message to +indicate what the source of the error is. This makes your code more readable and helps significantly with debugging. Not +every exercise will require you to raise an exception, but for those that do, the tests will only pass if you include +a message. + +To raise a message with an exception, just write it as an argument to the exception type. For example, instead of +`raise Exception`, you should write: + +```python +raise Exception("Meaningful message indicating the source of the error") +``` + +## Running the tests + +To run the tests, run the appropriate command below ([why they are different](https://github.com/pytest-dev/pytest/issues/1629#issue-161422224)): + +- Python 2.7: `py.test rna_transcription_test.py` +- Python 3.4+: `pytest rna_transcription_test.py` + +Alternatively, you can tell Python to run the pytest module (allowing the same command to be used regardless of Python version): +`python -m pytest rna_transcription_test.py` + +### Common `pytest` options + +- `-v` : enable verbose output +- `-x` : stop running tests on first failure +- `--ff` : run failures from previous test before running other test cases + +For other options, see `python -m pytest -h` + +## Submitting Exercises + +Note that, when trying to submit an exercise, make sure the solution is in the `$EXERCISM_WORKSPACE/python/rna-transcription` directory. + +You can find your Exercism workspace by running `exercism debug` and looking for the line that starts with `Workspace`. + +For more detailed information about running tests, code style and linting, +please see [Running the Tests](http://exercism.io/tracks/python/tests). + +## Source + +Hyperphysics [http://hyperphysics.phy-astr.gsu.edu/hbase/Organic/transcription.html](http://hyperphysics.phy-astr.gsu.edu/hbase/Organic/transcription.html) + +## Submitting Incomplete Solutions + +It's possible to submit an incomplete solution so you can see how others have completed the exercise. diff --git a/python/rna-transcription/rna_transcription.py b/python/rna-transcription/rna_transcription.py new file mode 100644 index 0000000..a02a5e6 --- /dev/null +++ b/python/rna-transcription/rna_transcription.py @@ -0,0 +1,3 @@ +transition = {'G':'C', 'C':'G', 'T':'A', 'A':'U'} +def to_rna(dna_strand): + return ''.join(transition[char] for char in dna_strand) \ No newline at end of file diff --git a/python/rna-transcription/rna_transcription_test.py b/python/rna-transcription/rna_transcription_test.py new file mode 100644 index 0000000..663416b --- /dev/null +++ b/python/rna-transcription/rna_transcription_test.py @@ -0,0 +1,30 @@ +import unittest + +from rna_transcription import to_rna + + +# Tests adapted from `problem-specifications//canonical-data.json` @ v1.3.0 + +class RnaTranscriptionTest(unittest.TestCase): + + def test_empty_rna_sequence(self): + self.assertEqual(to_rna(""), "") + + def test_transcribes_cytosine_to_guanine(self): + self.assertEqual(to_rna('C'), 'G') + + def test_transcribes_guanine_to_cytosine(self): + self.assertEqual(to_rna('G'), 'C') + + def test_transcribes_thymine_to_adenine(self): + self.assertEqual(to_rna('T'), 'A') + + def test_transcribes_adenine_to_uracil(self): + self.assertEqual(to_rna('A'), 'U') + + def test_transcribes_all_occurrences(self): + self.assertEqual(to_rna('ACGTGGTCTTAA'), 'UGCACCAGAAUU') + + +if __name__ == '__main__': + unittest.main()